cazy_webscraper
latest
Installation
Quickstart
Usage: Scraping CAZy
Tutorials on configuring
cazy_webscraper
to scrape CAZy
The Local CAZyme Database Structure
Retrieving structure files from PDB
Retrieving data from UniProt
Tutorials on configuring
cazy_webscraper
to retrieve data from UniProt
Retrieving Protein Sequences from GenBank
Retrieving Sequences from GenBank Tutorial
Extract protein squences from the local database
Tutorials on configuring the extraction of protein sequences
Retrieving structure files from PDB
Tutorials on configuring
cazy_webscraper
to retrieve data from PDB
Retrieving NCBI Taxonomic Classifications
Tutorials on configuring
cazy_webscraper
to retrieve NCBI taxonomic classifications
Retrieving genomic assembly data from NCBI Assembly
Tutorials on configuring
cazy_webscraper
to retrieve NCBI genomic assembly data
Retrieving GTDB Taxonomic Classifications
Tutorials on configuring
cazy_webscraper
to retrieve GTDB taxonomic classifications
Interrogating the data using the API
Tutorial on interrogating the data using the API
Caching and Using the Cache
Integrate a local CAZyme database into into downstream analyses
Contributing
Citations: cite cazy_webscraper and dependencies
License
Questions?
cazy_webscraper
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