cazy_webscraper
stable
  • Installation
  • Quickstart
  • Usage: Scraping CAZy
  • Tutorials on configuring cazy_webscraper to scrape CAZy
  • The Local CAZyme Database Structure
  • Retrieving structure files from PDB
  • Retrieving data from UniProt
  • Tutorials on configuring cazy_webscraper to retrieve data from UniProt
  • Retrieving Protein Sequences from GenBank
  • Retrieving Sequences from GenBank Tutorial
  • Extract protein squences from the local database
  • Tutorials on configuring the extraction of protein sequences
  • Retrieving structure files from PDB
  • Tutorials on configuring cazy_webscraper to retrieve data from PDB
  • Retrieving NCBI Taxonomic Classifications
  • Tutorials on configuring cazy_webscraper to retrieve NCBI taxonomic classifications
  • Retrieving genomic assembly data from NCBI Assembly
  • Tutorials on configuring cazy_webscraper to retrieve NCBI genomic assembly data
  • Retrieving GTDB Taxonomic Classifications
  • Tutorials on configuring cazy_webscraper to retrieve GTDB taxonomic classifications
  • Interrogating the data using the API
  • Tutorial on interrogating the data using the API
  • Caching and Using the Cache
  • Integrate a local CAZyme database into into downstream analyses
  • Contributing
  • Citations: cite cazy_webscraper and dependencies
  • License
  • Questions?
cazy_webscraper
  • Search

© Copyright 2022, Emma E. M. Hobbs. Revision b720c817.

Built with Sphinx using a theme provided by Read the Docs.